report_flowcytometer: Report for checking pipeline and sampling

In LEEF-UZH/LEEF.analysis: Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Report for checking pipeline and sampling

Description

Report for checking pipeline and sampling

Usage

report_flowcytometer(
  timestamp = "20230106",
  extracted_base_dir =
    "~/Duck/LEEFSwift3/LEEF_2.archived.data/LEEF/3.archived.data/extracted/",
  leef = "LEEF-2",
  output_dir = ".",
  format = "html",
  browse = TRUE
)

Arguments

timestamp	one or more timestamp to be plotted. If NULL, all timestamps available in extracted_base_dir will be plotted
extracted_base_dir	directory in which the extracted data can be found with filenames as in the archive
leef	LeEEF experiment, either "LEEF-1" or "LEEF-2"
output_dir	output directory of the fil=nal report
format	the format of the report as a character vector of length 1. Supported are at the moment: html (the default), pdf and word.
browse	if TRUE (the default) opr=en the report in the appropriate program.

Value

the fully qualified file name to the created report.

LEEF-UZH/LEEF.analysis documentation built on Feb. 8, 2025, 11:18 a.m.