report_reclassification: Do the reclassification and create a report

In LEEF-UZH/LEEF.analysis: Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Do the reclassification and create a report

Description

The report needs to adapted to new classifications.

Usage

report_reclassification(
  reclassification_report = system.file(leef, "Reclassification_20220105.Rmd", package =
    "LEEF.analysis"),
  leef = "LEEF-1",
  output_dir = normalizePath(file.path("~", "Reclassification_20220105")),
  output_name = "Reclassification_20220105",
  format = "html"
)

Arguments

reclassification_report	The name of the reclassification report. The default points to the first one. Included reclassification reports are: system.file(Reclassification_2022.01.10.Rmd, package = "LEEF.analysis") system.file(Reclassification_20220105_20220221_flowcam.Rmd, package = "LEEF.analysis") system.file(Reclassification_20220506.Rmd, package = "LEEF.analysis")
leef	LEEF study - allowed are ⁠"LEEF-1⁠ and "LEEF-2"
output_dir	directory of the output of the reclassification and the report
output_name	The name of the final report, without extension.
format	the format of the report as a character vector of length 1. Supported are at the moment: html (the default), pdf and word.

Value

the fully qualified file name to the created report.

LEEF-UZH/LEEF.analysis documentation built on Feb. 8, 2025, 11:18 a.m.