API for LieberInstitute/spatialLIBD
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
| Global functions | |
|---|---|
| .update_sce | Source code |
| .update_sce_layer | Source code |
| add10xVisiumAnalysis | Man page Source code |
| add_images | Man page Source code |
| add_key | Man page Source code |
| add_qc_metrics | Man page Source code |
| annotate_registered_cluster | Source code |
| annotate_registered_clusters | Man page Source code |
| app_server | Source code |
| app_ui | Source code |
| check_modeling_results | Man page Source code |
| check_sce | Man page Source code |
| check_sce_layer | Man page Source code |
| check_spe | Man page Source code |
| cluster_export | Man page Source code |
| cluster_import | Man page Source code |
| create_annotation_matrix | Source code |
| enough_ram | Man page Source code |
| f_merge | Source code |
| fetch_data | Man page Source code |
| frame_limits | Man page Source code |
| gene_set_enrichment | Man page Source code |
| gene_set_enrichment_plot | Man page Source code |
| geom_spatial | Man page Source code |
| get_colors | Man page Source code |
| golem_add_external_resources | Source code |
| img_edit | Man page Source code |
| img_update | Man page Source code |
| img_update_all | Man page Source code |
| layer_boxplot | Man page Source code |
| layer_stat_cor | Man page Source code |
| layer_stat_cor_plot | Man page Source code |
| libd_layer_colors | Man page |
| locate_images | Man page Source code |
| multi_gene_pca | Man page Source code |
| multi_gene_sparsity | Man page Source code |
| multi_gene_z_score | Man page Source code |
| prep_stitched_data | Man page Source code |
| read10xVisiumAnalysis | Man page Source code |
| read10xVisiumWrapper | Man page Source code |
| read_barcoded_csv | Source code |
| registration_block_cor | Man page Source code |
| registration_model | Man page Source code |
| registration_pseudobulk | Man page Source code |
| registration_stats_anova | Man page Source code |
| registration_stats_enrichment | Man page Source code |
| registration_stats_pairwise | Man page Source code |
| registration_wrapper | Man page Source code |
| run_app | Man page Source code |
| sce_to_spe | Man page Source code |
| sig_genes_extract | Man page Source code |
| sig_genes_extract_all | Man page Source code |
| sort_clusters | Man page Source code |
| spatialLIBD | Man page |
| spatialLIBD-package | Man page |
| tstats_Human_DLPFC_snRNAseq_Nguyen_topLayer | Man page |
| vis_clus | Man page Source code |
| vis_clus_p | Man page Source code |
| vis_gene | Man page Source code |
| vis_gene_p | Man page Source code |
| vis_grid_clus | Man page Source code |
| vis_grid_gene | Man page Source code |
