get_dist_m: Determines the shortest distances from all the genes to the...
In LucaGiudice/Esearch3D: Leveraging gene expression and chromatin architecture to predict intergenic enhancers
Description
Usage
Arguments
Value
Description
Given the gene-genic fragment network and the fragment-fragment network, it computes the distances from the genes to the non genic fragments
Usage
1
get_dist_m(gf_net, ff_net, frag_pattern = "Frag")
Arguments
gf_net
Edge list representing a network such that first column are genes and second column are "FragX" fragments
ff_net
Edge list representing a network such that first and second column are "FragX" fragments
frag_pattern
String pattern to identify a fragment by its nomenclature in the edge list (e.g. "Frag")
Value
Distance matrix of genes and non-genic fragments
LucaGiudice/Esearch3D documentation built on Dec. 17, 2021, 1:12 a.m.
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Description Usage Arguments Value
Description
Given the gene-genic fragment network and the fragment-fragment network, it computes the distances from the genes to the non genic fragments
Usage
1 | get_dist_m(gf_net, ff_net, frag_pattern = "Frag")
|
Arguments
gf_net |
Edge list representing a network such that first column are genes and second column are "FragX" fragments |
ff_net |
Edge list representing a network such that first and second column are "FragX" fragments |
frag_pattern |
String pattern to identify a fragment by its nomenclature in the edge list (e.g. "Frag") |
Value
Distance matrix of genes and non-genic fragments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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