start_GUI: Starts a shiny gui for the visualization of propagation...

In LucaGiudice/Esearch3D: Leveraging gene expression and chromatin architecture to predict intergenic enhancers

Description

Given the graph obtained with create_net2plot function, the annotation of the genes included in the graph with download_genes_annotation and the length of the chromosomes, it starts a graphical user interface to visualize the propagation values on the network including genes and fragments. This is useful to visualize the results of the two step propagation or the single gene propagation.

Usage

start_GUI(net1, ann_net_b, chr_len, example = FALSE)

Arguments

net1	igraph object to visualize
ann_net_b	dataframe, specifies the genes positions (chromosome, start and end position)
chr_len	dataframe, specifies the chromosomes (first column) and their length (second column)
example	boolean, show 5 genes to select as an example

LucaGiudice/Esearch3D documentation built on Dec. 17, 2021, 1:12 a.m.