Man pages for MPIIComputationalEpigenetics/epiRepeatR
epiRepeatR

filterRepRefAcc-RepeatEpigenomeCollection-methodfilterRepRefAcc-methods
filterRepRefChip-RepeatEpigenomeCollection-methodfilterRepRefChip-methods
filterRepRefMeth-RepeatEpigenomeCollection-methodfilterRepRefMeth-methods
getAnnot-RepeatEpigenomeCollection-methodgetAnnot-methods
getArgParsergetArgParser
getComparisonInfo-RepeatEpigenomeCollection-methodgetComparisonInfo-methods
getComparisons-RepeatEpigenomeCollection-methodgetComparisons-methods
getConfigElementgetConfigElement
getMarks-RepeatEpigenomeCollection-methodgetMarks-methods
getRepeatCovg-RepeatEpigenomeCollection-methodgetRepeatCovg-methods
getRepeatScoresDiff-RepeatEpigenomeCollection-methodgetRepeatScoresDiff-methods
getRepeatScores-RepeatEpigenomeCollection-methodgetRepeatScores-methods
getRepRef-RepeatEpigenomeCollection-methodgetRepRef-methods
getSampleGroupsgetSampleGroups
getSampleMarkTable-RepeatEpigenomeCollection-methodgetSampleMarkTable-methods
getSamples-RepeatEpigenomeCollection-methodgetSamples-methods
loadConfigloadConfig
loadConfigFromCommandLineloadConfigFromCommandLine
logger.cmd.argslogger.cmd.args
normalizeMatrixnormalizeMatrix
plotRepeatAlignmentStatsplotRepeatAlignmentStats
RepeatEpigenomeCollection-classRepeatEpigenomeCollection Class
runAnalysisrunAnalysis
saveConfigsaveConfig
setConfigElementsetConfigElement
MPIIComputationalEpigenetics/epiRepeatR documentation built on March 22, 2021, 11:09 p.m.