Description Usage Arguments Value Author(s)
Retrieve values of epigenetic quantifications for each RE in each sample
1 2 3 4 | ## S4 method for signature 'RepeatEpigenomeCollection'
getRepeatScores(.Object, mark,
dropEmptySamples = FALSE,
minCpGcov = getConfigElement("meth.minCpGcov"))
|
.Object |
|
mark |
Epigenetic mark for which the score information is retrieved |
dropEmptySamples |
Logical indicating whether samples in which the mark is not present should be dropped |
minCpGcov |
[ |
A matrix of dimension numRE X numSamples containing scores. Scores are mean methylation levels for DNA methylation and log2 of the fold change for enrichment based methods.
Fabian Mueller
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