getComparisons-RepeatEpigenomeCollection-method: getComparisons-methods

In MPIIComputationalEpigenetics/epiRepeatR: epiRepeatR

Description

Retrieve a list of comparisonInfo objects based

Usage

## S4 method for signature 'RepeatEpigenomeCollection'
getComparisons(.Object,
  annotCols = NULL, minGroupSize = 2L, maxGroupCount = 2,
  allPairwise = TRUE, covariateCols = character(0))

Arguments

.Object	RepeatEpigenomeCollection object
annotCols	names of the column in the sample annotation table on which the comparisons are based. NULL (default) indicates that all columns will be inspected for compatible comparisons
minGroupSize	minimum number of samples to be considered a group
maxGroupCount	maximum number of groups in each sample annotation column
allPairwise	if more than two groups exist for a sample annotation column, should all pairwise comparisons be conducted (as opposed to one vs all). currently the only allowed value is TRUE (default)
covariateCols	column names in the sample annotation table of potentially confounding covariates for the analysis

Value

List of comparison information objects (structured S3 object of class comparisonInfo)

Author(s)

Fabian Mueller

MPIIComputationalEpigenetics/epiRepeatR documentation built on March 22, 2021, 11:09 p.m.