filterRepRefChip-RepeatEpigenomeCollection-method: filterRepRefChip-methods

Description Usage Arguments Details Value Author(s)

Description

Given a RepeatEpigenomeCollection object, remove repeats that do not fulfill the coverage criteria in any sample

Usage

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## S4 method for signature 'RepeatEpigenomeCollection'
filterRepRefChip(.Object,
  minReads = getConfigElement("plotRepTree.meth.minReads"))

Arguments

.Object

RepeatEpigenomeCollection object

minReads

threshold for the minimum number of reads required to cover a repeat

Details

A repeat must fulfill the criteria in all samples in order to be retained

Value

modified RepeatEpigenomeCollection object

Author(s)

Fabian Mueller


MPIIComputationalEpigenetics/epiRepeatR documentation built on July 24, 2018, 10:10 p.m.