filterRepRefChip-RepeatEpigenomeCollection-method: filterRepRefChip-methods
In MPIIComputationalEpigenetics/epiRepeatR: epiRepeatR
Description
Usage
Arguments
Details
Value
Author(s)
Description
Given a RepeatEpigenomeCollection object, remove repeats that do not fulfill
the coverage criteria in any sample
Usage
1
2
3
## S4 method for signature 'RepeatEpigenomeCollection'
filterRepRefChip(.Object,
minReads = getConfigElement("plotRepTree.meth.minReads"))
Arguments
.Object
RepeatEpigenomeCollection object
minReads
threshold for the minimum number of reads required to cover a repeat
Details
A repeat must fulfill the criteria in all samples in order to be retained
Value
modified RepeatEpigenomeCollection object
Author(s)
Fabian Mueller
MPIIComputationalEpigenetics/epiRepeatR documentation built on March 22, 2021, 11:09 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Given a RepeatEpigenomeCollection object, remove repeats that do not fulfill
the coverage criteria in any sample
Usage
1 2 3 | ## S4 method for signature 'RepeatEpigenomeCollection'
filterRepRefChip(.Object,
minReads = getConfigElement("plotRepTree.meth.minReads"))
|
Arguments
.Object |
|
minReads |
threshold for the minimum number of reads required to cover a repeat |
Details
A repeat must fulfill the criteria in all samples in order to be retained
Value
modified RepeatEpigenomeCollection object
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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