getComparisonInfo-RepeatEpigenomeCollection-method: getComparisonInfo-methods

In MPIIComputationalEpigenetics/epiRepeatR: epiRepeatR

Description

Retrieve values of differential epigenetic quantifications for each RE in each sample

Usage

## S4 method for signature 'RepeatEpigenomeCollection'
getComparisonInfo(.Object, annotCol,
  name.grp1, name.grp2, cmpName = NULL, covariateCols = character(0))

Arguments

.Object	RepeatEpigenomeCollection object
annotCol	name of the column in the sample annotation table on which the comparison is based
name.grp1	name of the first group in the corresponding column of the sample annotation table
name.grp2	name of the second group in the corresponding column of the sample annotation table
cmpName	(optional) strings specifying a name for the comparison
covariateCols	column names in the sample annotation table of potentially confounding covariates for the analysis

Value

Comparison information as structured S3 object of class comparisonInfo

Author(s)

Fabian Mueller

MPIIComputationalEpigenetics/epiRepeatR documentation built on March 22, 2021, 11:09 p.m.