forest_plot: Forest plot for multiple exposures and multiple outcomes

In MRCIEU/TwoSampleMR: Two Sample MR Functions and Interface to MR Base Database

Forest plot for multiple exposures and multiple outcomes

Description

Perform MR of multiple exposures and multiple outcomes. This plots the results.

Usage

forest_plot(
  mr_res,
  exponentiate = FALSE,
  single_snp_method = "Wald ratio",
  multi_snp_method = "Inverse variance weighted",
  group_single_categories = TRUE,
  by_category = TRUE,
  in_columns = FALSE,
  threshold = NULL,
  xlab = "",
  xlim = NULL,
  trans = "identity",
  ao_slc = TRUE,
  priority = "Cardiometabolic"
)

Arguments

mr_res	Results from mr().
exponentiate	Convert effects to OR? Default is FALSE.
single_snp_method	Which of the single SNP methosd to use when only 1 SNP was used to estimate the causal effect? The default is "Wald ratio".
multi_snp_method	Which of the multi-SNP methods to use when there was more than 1 SNPs used to estimate the causal effect? The default is "Inverse variance weighted".
group_single_categories	If there are categories with only one outcome, group them together into an "Other" group. The default is TRUE.
by_category	Separate the results into sections by category? The default is TRUE.
in_columns	Separate the exposures into different columns. The default is FALSE.
threshold	p-value threshold to use for colouring points by significance level. If NULL (default) then colour layer won't be applied.
xlab	x-axis label. If in_columns=TRUE then the exposure values are appended to the end of xlab. e.g. if xlab="Effect of" then x-labels will read "Effect of exposure1", "Effect of exposure2" etc. Otherwise will be printed as is.
xlim	limit x-axis range. Provide vector of length 2, with lower and upper bounds. The default is NULL.
trans	Transformation to apply to x-axis. e.g. "identity", "log2", etc. The default is "identity".
ao_slc	retrieve sample size and subcategory from available_outcomes(). If set to FALSE then mr_res must contain the following additional columns: sample_size and subcategory. The default behaviour is to use available_outcomes() to retrieve sample size and subcategory.
priority	Name of category to prioritise at the top of the forest plot. The default is "Cardiometabolic".

Value

grid plot object

MRCIEU/TwoSampleMR documentation built on March 26, 2024, 6:11 a.m.