Man pages for MRCIEU/gwasglue
GWAS summary data sources connected to analytical tools
| clump_gwasvcf | Perform LD clumping |
| cojo_cond | Perform conditional analysis using GCTA COJO |
| cojo_sumstat_file | Write vcf file to cojo sumstat file |
| coloc_to_gassocplot | Convert coloc dataset to gassocplot dataset |
| gwasvcf_to_coloc | Generate coloc dataset from vcf files |
| gwasvcf_to_finemapr | Generate data for fine mapping analysis |
| gwasvcf_to_TwoSampleMR | Create exposure or outcome data format for TwoSampleMR from... |
| harmonise | Generic harmonisation function |
| harmonise_against_ref | Harmonise gwas alleles to be same as reference |
| ieugwasr_to_coloc | Generate coloc dataset from the IEU GWAS database |
| ieugwasr_to_finemapr | Generate data for analysis in various finemapping methods |
| ieugwasr_to_gassocplot | Generate regional plot for ieugwasr |
| ieugwasr_to_TwoSampleMR | Convert output from query to TwoSampleMR format |
| is_forward_strand | Check a GWAS dataset against a reference known to be on the... |
| make_TwoSampleMR_dat | Create a harmonised dataset from lists of vcf files |
| map_variants_to_regions | For a set of variants map to LD regions |
| organise_ids | Figure out specific files and IDs depending on what files... |
| pipe | Pipe operator |
| read_gwas | Read in GWAS dataset |
| read_reference | Read in reference dataset |
| set_bc4_files | Determine locations of useful reference datasets on... |
| susieR_pipeline | Perform fine mapping pipeline using susieR |
| write_out | Create format for HPC pipeline |
