coloc_to_gassocplot: Convert coloc dataset to gassocplot dataset
In MRCIEU/gwasglue: GWAS summary data sources connected to analytical tools
Description
Usage
Arguments
Value
Description
Convert coloc dataset to gassocplot dataset
Usage
1
coloc_to_gassocplot(coloclist, bfile = NULL, plink_bin = NULL)
Arguments
coloclist
Output from *_to_coloc
bfile
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink dataset here.
plink_bin
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink executable here
Value
List to feed into gassocplot
MRCIEU/gwasglue documentation built on Feb. 15, 2022, 3:25 p.m.
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Description Usage Arguments Value
Description
Convert coloc dataset to gassocplot dataset
Usage
1 | coloc_to_gassocplot(coloclist, bfile = NULL, plink_bin = NULL)
|
Arguments
coloclist |
Output from *_to_coloc |
bfile |
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink dataset here. |
plink_bin |
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink executable here |
Value
List to feed into gassocplot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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