ieugwasr_to_coloc: Generate coloc dataset from the IEU GWAS database
In MRCIEU/gwasglue: GWAS summary data sources connected to analytical tools
Description
Usage
Arguments
Value
Description
Generate coloc dataset from the IEU GWAS database
Usage
1
ieugwasr_to_coloc(id1, id2, chrompos, type1 = NULL, type2 = NULL)
Arguments
id1
ID for trait 1
id2
ID for trait 2
chrompos
Character of chr:pos1-pos2
type1
Provide "cc" or "quant" to override automatic lookup of trait type for trait 1
type2
Provide "cc" or "quant" to override automatic lookup of trait type for trait 2
Value
List of datasets to feed into coloc
MRCIEU/gwasglue documentation built on Feb. 15, 2022, 3:25 p.m.
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Description Usage Arguments Value
Description
Generate coloc dataset from the IEU GWAS database
Usage
1 | ieugwasr_to_coloc(id1, id2, chrompos, type1 = NULL, type2 = NULL)
|
Arguments
id1 |
ID for trait 1 |
id2 |
ID for trait 2 |
chrompos |
Character of chr:pos1-pos2 |
type1 |
Provide "cc" or "quant" to override automatic lookup of trait type for trait 1 |
type2 |
Provide "cc" or "quant" to override automatic lookup of trait type for trait 2 |
Value
List of datasets to feed into coloc
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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