ieugwasr_to_gassocplot: Generate regional plot for ieugwasr
In MRCIEU/gwasglue: GWAS summary data sources connected to analytical tools
Description
Usage
Arguments
Value
Description
Uses James Staley's gassocplot package https://github.com/jrs95/gassocplot
Usage
1
ieugwasr_to_gassocplot(chrpos, id, bfile = NULL, plink_bin = NULL)
Arguments
chrpos
A window range to plot e.g. 16:3349655-3849655
id
Vector of one or more IEU GWAS db study IDs
bfile
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink dataset here.
plink_bin
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink executable here
Value
assoc_plot or stack_assoc_plot if multiple markers given
MRCIEU/gwasglue documentation built on Feb. 15, 2022, 3:25 p.m.
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Description Usage Arguments Value
Description
Uses James Staley's gassocplot package https://github.com/jrs95/gassocplot
Usage
1 | ieugwasr_to_gassocplot(chrpos, id, bfile = NULL, plink_bin = NULL)
|
Arguments
chrpos |
A window range to plot e.g. 16:3349655-3849655 |
id |
Vector of one or more IEU GWAS db study IDs |
bfile |
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink dataset here. |
plink_bin |
If number of SNPs > 500 then need to provide your own LD reference panel. Provide plink executable here |
Value
assoc_plot or stack_assoc_plot if multiple markers given
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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