gwasvcf_to_finemapr: Generate data for fine mapping analysis
In MRCIEU/gwasglue: GWAS summary data sources connected to analytical tools
Description
Usage
Arguments
Value
Description
For a given region and VCF file, extracts the variants in the region along with LD matrix from a reference panel
Usage
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gwasvcf_to_finemapr(
region,
vcf,
bfile,
plink_bin = genetics.binaRies::get_plink_binary(),
threads = 1
)
Arguments
region
Region of the genome to extract eg 1:109317192-110317192". Can be array
vcf
Path to VCF file or VCF object
bfile
LD reference panel
plink_bin
Path to plink. Default = genetics.binaRies::get_plink_binary()
threads
Number of threads to run in parallel. Default=1
Value
List of datasets for finemapping
MRCIEU/gwasglue documentation built on Feb. 15, 2022, 3:25 p.m.
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Description Usage Arguments Value
Description
For a given region and VCF file, extracts the variants in the region along with LD matrix from a reference panel
Usage
1 2 3 4 5 6 7 | gwasvcf_to_finemapr(
region,
vcf,
bfile,
plink_bin = genetics.binaRies::get_plink_binary(),
threads = 1
)
|
Arguments
region |
Region of the genome to extract eg 1:109317192-110317192". Can be array |
vcf |
Path to VCF file or VCF object |
bfile |
LD reference panel |
plink_bin |
Path to plink. Default = genetics.binaRies::get_plink_binary() |
threads |
Number of threads to run in parallel. Default=1 |
Value
List of datasets for finemapping
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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