ieugwasr_to_finemapr: Generate data for analysis in various finemapping methods
In MRCIEU/gwasglue: GWAS summary data sources connected to analytical tools
Description
Usage
Arguments
Value
Description
Uses the finemapr package https://github.com/variani/finemapr
Usage
1
ieugwasr_to_finemapr(region, id, bfile = NULL, plink_bin = NULL)
Arguments
region
Region of the genome to extract eg 1:109317192-110317192"
id
Array of GWAS studies to query. See gwasinfo for available studies
bfile
If this is provided then will use the API. Default = NULL
plink_bin
If null and bfile is not null then will detect packaged plink binary for specific OS. Otherwise specify path to plink binary. Default = NULL
Value
Each id will be a list of z score data, ld matrix, and sample size
MRCIEU/gwasglue documentation built on Feb. 15, 2022, 3:25 p.m.
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Description Usage Arguments Value
Description
Uses the finemapr package https://github.com/variani/finemapr
Usage
1 | ieugwasr_to_finemapr(region, id, bfile = NULL, plink_bin = NULL)
|
Arguments
region |
Region of the genome to extract eg 1:109317192-110317192" |
id |
Array of GWAS studies to query. See |
bfile |
If this is provided then will use the API. Default = NULL |
plink_bin |
If null and bfile is not null then will detect packaged plink binary for specific OS. Otherwise specify path to plink binary. Default = NULL |
Value
Each id will be a list of z score data, ld matrix, and sample size
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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