Man pages for MalgorzataOles/BloodCancerMultiOmics2017
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
| addNrisk | Add number-at-risk annotations to a plot |
| col2hex | Converts color names with alpha to hex |
| data-conctab | Concentrations of drugs used in the drug screen |
| data-cytokineViab | Response of CLL to exposure to cytokines |
| data-day23rep | Cell viability data for 3 replicated samples |
| data-dds | Gene expression data |
| data-drpar | Cell viability data from the high-throughput drug screen |
| data-drugs | Meta data of the compounds |
| data-exprTreat | Gene expression before and after drug treatment |
| data-lpdAll | An assembly of drug viability data, methylation clusters,... |
| data-methData | DNA methylation data |
| data-mutCOM | Genetic information of patient samples |
| data-patmeta | Meta data of the patient samples |
| data-validateExp | Data of the validation drug sensitivity screen using five... |
| deckel | treshold an array from below and above |
| defineResponseGroups | divides patients into response groups: BTK, MEK, mTOR,... |
| exp10div | Axis labels for p-values |
| giveDrugLabel | Convert extended drug IDs to drug names |
| log10div | log10 with sign |
| meltWholeDF | Wide format to long format data conversion |
| moround | Round numbers to the ceiling of a given base |
| nrisk | Get number-at-risk from a survfit object |
| percentAxisScale | Fraction to percent converter |
| pheatmapwh | A modification of 'pheatmap' from the pheatmap package by... |
| safeMatch | safe version of the match function that throws an error if... |
| scientific_10 | log10 scale labels in ggplot2 |
| smunlist | Unlist with name preservation |
| stripConc | Convert extended drug IDs to drug names |
| survplot | Draw augmented K-M survival curves |
| toCaps | Capitalize first character |
| whichInGrob | Return indices of layers of interest from the grob object |
