data-lpdAll: An assembly of drug viability data, methylation clusters,...
In MalgorzataOles/BloodCancerMultiOmics2017: "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
lpdAll R Documentation
An assembly of drug viability data, methylation clusters, important mutations and copy number variants
Description
Columns indicate patients and rows different omics features.
pData() contains some basic patient characteristics.
fData()$type contains information to which omics data type each feature belongs to:
1) viab (viability values for n=448 data points): 'D_001' stands for the drug as coded in the object drugs and '_01' indicates the concentration step. '_1:5' corresponds to the average across all five concentration steps and '_4:5' corresponds to all the concentration steps .
2) gen (n=89): important gene mutations and copy number variants derived from WES, SNP arrays, FISH and targeted sequencing.
3) Methylation_Cluster: The association of each CLL patient with one of the three Methylation Cluster was determined as described in the methods section.
4) IGHV mutation status for CLL patients was determined as described in the methods section.
Usage
lpdAll
Format
"ExpressionSet" with Features 539 and Samples 249.
Author(s)
Wolfgang Huber
MalgorzataOles/BloodCancerMultiOmics2017 documentation built on March 29, 2024, 2:29 p.m.
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| lpdAll | R Documentation |
An assembly of drug viability data, methylation clusters, important mutations and copy number variants
Description
Columns indicate patients and rows different omics features.
pData() contains some basic patient characteristics.
fData()$type contains information to which omics data type each feature belongs to:
1) viab (viability values for n=448 data points): 'D_001' stands for the drug as coded in the object drugs and '_01' indicates the concentration step. '_1:5' corresponds to the average across all five concentration steps and '_4:5' corresponds to all the concentration steps .
2) gen (n=89): important gene mutations and copy number variants derived from WES, SNP arrays, FISH and targeted sequencing.
3) Methylation_Cluster: The association of each CLL patient with one of the three Methylation Cluster was determined as described in the methods section.
4) IGHV mutation status for CLL patients was determined as described in the methods section.
Usage
lpdAll
Format
"ExpressionSet" with Features 539 and Samples 249.
Author(s)
Wolfgang Huber
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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