giveDrugLabel: Convert extended drug IDs to drug names

In MalgorzataOles/BloodCancerMultiOmics2017: "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis

Convert extended drug IDs to drug names

Description

The function converts drug IDs given in a format X1_X2_Y1 or X1_X2-Y2, where X1_X2 is a drug id, Y1 is a number of drug concentration step and Y2 is a drug concentration, to format "Z Y2 µM", where Z is a drug name.

Usage

giveDrugLabel(drid, ctab, dtab)

Arguments

drid	character vector
ctab	data frame
dtab	data frame

Details

The drug ID (X) has to be present in row names of dtab object. ctab is a data frame with drug concentrations (columns are concentrations and rows are the drugs). dtab is a data frame with drugs in the rows and at least one column with drug characteristics. Here the column "name" with the name of the drug is needed.

Value

character vector

Author(s)

Małgorzata Oleś <[e-mail]>

Examples

data("drugs","conctab")
giveDrugLabel(c("D_001-4", "D_002-0.02", "D_001_4", "D_002_1"), 
conctab, drugs)

MalgorzataOles/BloodCancerMultiOmics2017 documentation built on March 29, 2024, 2:29 p.m.