data-mutCOM: Genetic information of patient samples
In MalgorzataOles/BloodCancerMultiOmics2017: "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
mutCOM R Documentation
Genetic information of patient samples
Description
This "NChannelSet" object contains genetic data for samples investigated in any
of the three experiments: whole exome sequencing, targeted sequencing or
fluorescent in situ hybridization. Object consists of one channel called
binary, with values: 0 if the mutation was absent, 1 if mutation was present
or NA if the mutation was not investigated. Feature data of the object
contains detailed information about mutation in TP53 and BRAF genes - the
variant(s) detected ('*_CDS' and '*_AA' columns) and the percentage at which
each variant was detected ('*_
For TP53, BRAF, KRAS, del17p13, UMODL1, CREBBP, PRPF8 and trisomy12 mutation
an additional column 'cs' summarizes the clone size of
the mutated population. This value is a fraction at which the most abundant
variant is present in a sample.
Usage
mutCOM
Format
"NChannelSet" object with 89 genes (columns) and 265 patient samples (rows).
Author(s)
Malgorzata Oles
MalgorzataOles/BloodCancerMultiOmics2017 documentation built on March 29, 2024, 2:29 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| mutCOM | R Documentation |
Genetic information of patient samples
Description
This "NChannelSet" object contains genetic data for samples investigated in any
of the three experiments: whole exome sequencing, targeted sequencing or
fluorescent in situ hybridization. Object consists of one channel called
binary, with values: 0 if the mutation was absent, 1 if mutation was present
or NA if the mutation was not investigated. Feature data of the object
contains detailed information about mutation in TP53 and BRAF genes - the
variant(s) detected ('*_CDS' and '*_AA' columns) and the percentage at which
each variant was detected ('*_
For TP53, BRAF, KRAS, del17p13, UMODL1, CREBBP, PRPF8 and trisomy12 mutation
an additional column 'cs' summarizes the clone size of
the mutated population. This value is a fraction at which the most abundant
variant is present in a sample.
Usage
mutCOM
Format
"NChannelSet" object with 89 genes (columns) and 265 patient samples (rows).
Author(s)
Malgorzata Oles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.