Description Usage Arguments Examples
this function validates and annotates plant glycopeptide-spectrum matches
1 2 3 | gPSMvalidatorMaxis(data, modification, modificationName, mZmarkerIons,
minMarkerIons = 2, itol_ppm = 15, minMarkerIntensityRatio = 2,
peakplot06 = TRUE, validate = FALSE)
|
data |
a list compiled with compileData function |
modification |
vector containing the modification mass |
modificationName |
a character vector containing the name of the modification |
mZmarkerIons |
a vector containing the mass values of the oxonium ions |
minMarkerIons |
the minimum number of oxonium ions required for a match to be valid, default is 2 |
itol_ppm |
the MS ion tolerance in ppm, default is 15 |
minMarkerIntensityRatio |
the minimum intensity ratio of marker ions, default is 2 |
peakplot06 |
if true, plots will be generated, default is TRUE |
validate |
if true, gPSMs will be validated, if false, all will be plotted, default is FALSE |
1 |
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