Description Usage Arguments Examples
this function adds the mass for carbamidomethylation, Q to pyroGlu, and methionine oxidation and filters for glycopeptides
1 2 | glycoChainSawHRP(digest.N, digest.n, Carb_pyroE = TRUE,
methionineOxidation = TRUE, glycoOnly = TRUE)
|
digest.N |
a chainsaw in silico digest with all glycosylation sites having a capital n (N) |
digest.n |
a chainsaw in silico digest with all glycosylation sites having a lower case n (n) |
methionineOxidation |
16 Da is added to the peptide mass for every methionine present, and a new row is added to the table so that every methionine containing peptide has a value for oxidized and not oxidized, default=TRUE |
glycoOnly |
return a dataframe containing only data for peptide with glycosylation sites, default=TRUE |
carbamidomethylation |
57 Da is added to the peptide mass for every cysteine present, default=TRUE |
1 |
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