glycoChange: A function to change N to n for predicted glycosylation sites
In MargaretBaker/plantGlycoMS: A package for processing plant glycosylation MS data
Description
Usage
Arguments
Examples
Description
this function changes N to n for predicted glycosylation sites
Usage
1
glycoChange(fasta)
Arguments
fasta
a character string containing the amino acid sequence of a protein. A fasta file can be imported with the R package 'seqinr'.
Examples
1
2
proteinSeq <- "DLQIGFYNQSCPSAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAAPNNPSLRGFEVIAAAKSAVEAACPKTVSCADILAFAARDSAALAGNITYQVPSGRRDGNVSLASEALTNIPAPTFNATQLINSFAGKNLTADEMVTLSGAHSIGVSHCFSFLNRIYNFSNTSQVDPTLSSSYADLLRTKCPSNSTRFTPITVSLDIITPTVLDNRYYTGVQLTLGLLTSDQALVTEANLSAAVKNNADNLTAWVAKFAQAIVKMGQIQVLTGTQGEIRTNCSVVNSAS"
glycoChange(fasta=proteinSeq)
MargaretBaker/plantGlycoMS documentation built on May 9, 2019, 9:56 p.m.
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Description Usage Arguments Examples
Description
this function changes N to n for predicted glycosylation sites
Usage
1 | glycoChange(fasta)
|
Arguments
fasta |
a character string containing the amino acid sequence of a protein. A fasta file can be imported with the R package 'seqinr'. |
Examples
1 2 | proteinSeq <- "DLQIGFYNQSCPSAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAAPNNPSLRGFEVIAAAKSAVEAACPKTVSCADILAFAARDSAALAGNITYQVPSGRRDGNVSLASEALTNIPAPTFNATQLINSFAGKNLTADEMVTLSGAHSIGVSHCFSFLNRIYNFSNTSQVDPTLSSSYADLLRTKCPSNSTRFTPITVSLDIITPTVLDNRYYTGVQLTLGLLTSDQALVTEANLSAAVKNNADNLTAWVAKFAQAIVKMGQIQVLTGTQGEIRTNCSVVNSAS"
glycoChange(fasta=proteinSeq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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