glycoChange: A function to change N to n for predicted glycosylation sites

Description Usage Arguments Examples

Description

this function changes N to n for predicted glycosylation sites

Usage

1
glycoChange(fasta)

Arguments

fasta

a character string containing the amino acid sequence of a protein. A fasta file can be imported with the R package 'seqinr'.

Examples

1
2
proteinSeq <- "DLQIGFYNQSCPSAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAAPNNPSLRGFEVIAAAKSAVEAACPKTVSCADILAFAARDSAALAGNITYQVPSGRRDGNVSLASEALTNIPAPTFNATQLINSFAGKNLTADEMVTLSGAHSIGVSHCFSFLNRIYNFSNTSQVDPTLSSSYADLLRTKCPSNSTRFTPITVSLDIITPTVLDNRYYTGVQLTLGLLTSDQALVTEANLSAAVKNNADNLTAWVAKFAQAIVKMGQIQVLTGTQGEIRTNCSVVNSAS"
glycoChange(fasta=proteinSeq)

MargaretBaker/plantGlycoMS documentation built on May 9, 2019, 9:56 p.m.