psm02: A function to match peptides to spectra

Description Usage Arguments Examples

Description

this function plots MS data

Usage

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psm02(sequence, spec, FUN = defaultIon, plot = FALSE,
  fi = protViz::fragmentIon(sequence, FUN = FUN)[[1]],
  fragmentIonError = 0.02)

Arguments

sequence

the peptide sequence

spec

a spectrum

FUN

a function for calculating ions, default is defaultIon

plot

should the psm be plotted, default is FALSE

fi

how are fragment ions calculated, default is protViz::fragmentIon(sequence, FUN = FUN)[[1]]

fragmentIonError

the mass error for fragment ions in mz, default is 0.02

Examples

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MargaretBaker/plantGlycoMS documentation built on May 9, 2019, 9:56 p.m.