Description Usage Arguments Examples
this function plots MS data
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peptideSequence |
a peptide sequence |
spec |
a spectrum |
FUN |
a function to calculate ions, default is defaultIons |
fi |
a fragment ion function, default is protViz::fragmentIon(peptideSequence, FUN = FUN)[[1]] |
main |
the main title of a plot, default is NULL |
sub |
the subtitle of a plot, default is NULL |
xlim |
the limits of the x axis, default is range(spec$mZ, na.rm = TRUE) |
itol |
the fragment ion mass tolerance in delta mz, default is 0.02 |
pattern.abc |
the abc pattern, default is "[abc].*" |
pattern.xyz |
the xyz pattern, default is "[xyz].*", ion.axes = TRUE) |
the |
limits of the y axis, default is ylim = range(spec$intensity, na.rm = TRUE) |
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