MarioniLab/DropletUtils: Utilities for Handling Single-Cell Droplet Data

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Getting started

Package details

Bioconductor views Coverage DataImport GeneExpression ImmunoOncology RNASeq Sequencing SingleCell Transcriptomics
Maintainer
LicenseGPL-3
Version1.13.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("MarioniLab/DropletUtils")
MarioniLab/DropletUtils documentation built on June 1, 2021, 11:47 p.m.