View source: R/get10xMolInfoStats.R
get10xMolInfoStats | R Documentation |
Compute some basic per-cell statistics from the 10x molecule information file.
get10xMolInfoStats(sample, barcode.length=NULL, use.library=NULL)
sample |
A string containing the path to the molecule information HDF5 file. |
barcode.length |
An integer scalar specifying the length of the cell barcode, see |
use.library |
An integer vector specifying the library indices for which to extract molecules from |
A DataFrame containing one row per cell library, with the fields:
cell
:Character, the cell barcode.
gem_group
:Integer, the GEM group.
num.umis
:Integer, the number of UMIs assigned to this cell barcode/GEM group combination.
num.reads
:Integer, the number of reads for this combination.
num.genes
:Integer, the number of detected genes.
Aaron Lun
read10xMolInfo
# Mocking up some 10X HDF5-formatted data.
out <- DropletUtils:::simBasicMolInfo(tempfile())
get10xMolInfoStats(out)
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