Files in MarioniLab/DropletUtils

Utilities for Handling Single-Cell Droplet Data

.BBSoptions

.github/workflows/check-bioc.yml

.gitignore

DESCRIPTION

NAMESPACE

R/RcppExports.R R/ambientContribMaximum.R R/ambientContribNegative.R R/ambientContribSparse.R R/ambientProfileBimodal.R R/ambientProfileEmpty.R R/barcodeRanks.R R/chimericDrops.R R/cleanTagCounts.R R/defaultDrops.R R/downsampleReads.R R/emptyDrops.R R/emptyDropsCellRanger.R R/encodeSequences.R R/get10xMolInfoStats.R R/hashedDrops.R R/makeCountMatrix.R R/namespace.R R/read10xCounts.R R/read10xMolInfo.R R/reexports.R R/removeAmbience.R R/sim10xMolInfo.R R/simCounts.R R/swappedDrops.R R/utils.R R/write10xCounts.R

inst/CITATION

inst/NEWS.Rd

longtests/testthat.R longtests/testthat/test-molinfo.R longtests/testthat/test-read10x.R man/ambientContribMaximum.Rd man/ambientContribNegative.Rd man/ambientContribSparse.Rd man/ambientProfileBimodal.Rd man/ambientProfileEmpty.Rd man/barcodeRanks.Rd man/chimericDrops.Rd man/cleanTagCounts.Rd man/defaultDrops.Rd man/downsampleReads.Rd man/emptyDrops.Rd man/emptyDropsCellRanger.Rd man/encodeSequences.Rd man/get10xMolInfoStats.Rd man/hashedDrops.Rd man/makeCountMatrix.Rd man/read10xCounts.Rd man/read10xMolInfo.Rd man/reexports.Rd man/removeAmbience.Rd man/swappedDrops.Rd man/write10xCounts.Rd

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/downsample_run.cpp

src/encode_sequences.cpp

src/find_chimeric.cpp

src/find_swapped.cpp

src/get_cell_barcodes.cpp

src/group_cells.cpp

src/hashed_deltas.cpp

src/montecarlo_pval.cpp

src/rand_custom.cpp

src/rand_custom.h

src/utils.cpp

src/utils.h

tests/testthat.R tests/testthat/setup.R tests/testthat/test-amb-negative.R tests/testthat/test-amb-sparse.R tests/testthat/test-chimera.R tests/testthat/test-clean-tags.R tests/testthat/test-downsample.R tests/testthat/test-empty.R tests/testthat/test-encoding.R tests/testthat/test-hashing.R tests/testthat/test-inferamb.R tests/testthat/test-makecounts.R tests/testthat/test-maxamb.R tests/testthat/test-misc.R tests/testthat/test-molinfo.R tests/testthat/test-molstats.R tests/testthat/test-read10x.R tests/testthat/test-rmamb.R tests/testthat/test-swapping.R tests/testthat/test-write10x.R vignettes/DropletUtils.Rmd

MarioniLab/DropletUtils documentation built on March 14, 2024, 11:04 p.m.