Files in MarioniLab/DropletUtils
Utilities for Handling Single-Cell Droplet Data
.BBSoptions
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/ambientContribMaximum.R
R/ambientContribNegative.R
R/ambientContribSparse.R
R/ambientProfileBimodal.R
R/ambientProfileEmpty.R
R/barcodeRanks.R
R/chimericDrops.R
R/cleanTagCounts.R
R/defaultDrops.R
R/downsampleReads.R
R/emptyDrops.R
R/emptyDropsCellRanger.R
R/encodeSequences.R
R/get10xMolInfoStats.R
R/hashedDrops.R
R/makeCountMatrix.R
R/namespace.R
R/read10xCounts.R
R/read10xMolInfo.R
R/reexports.R
R/removeAmbience.R
R/sim10xMolInfo.R
R/simCounts.R
R/swappedDrops.R
R/utils.R
R/write10xCounts.R
README.md
inst/CITATION
inst/NEWS.Rd
longtests/testthat.R
longtests/testthat/test-molinfo.R
longtests/testthat/test-read10x.R
man/ambientContribMaximum.Rd
man/ambientContribNegative.Rd
man/ambientContribSparse.Rd
man/ambientProfileBimodal.Rd
man/ambientProfileEmpty.Rd
man/barcodeRanks.Rd
man/chimericDrops.Rd
man/cleanTagCounts.Rd
man/defaultDrops.Rd
man/downsampleReads.Rd
man/emptyDrops.Rd
man/emptyDropsCellRanger.Rd
man/encodeSequences.Rd
man/get10xMolInfoStats.Rd
man/hashedDrops.Rd
man/makeCountMatrix.Rd
man/read10xCounts.Rd
man/read10xMolInfo.Rd
man/reexports.Rd
man/removeAmbience.Rd
man/swappedDrops.Rd
man/write10xCounts.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/downsample_run.cpp
src/encode_sequences.cpp
src/find_chimeric.cpp
src/find_swapped.cpp
src/get_cell_barcodes.cpp
src/group_cells.cpp
src/hashed_deltas.cpp
src/montecarlo_pval.cpp
src/rand_custom.cpp
src/rand_custom.h
src/utils.cpp
src/utils.h
tests/testthat.R
tests/testthat/setup.R
tests/testthat/test-amb-negative.R
tests/testthat/test-amb-sparse.R
tests/testthat/test-chimera.R
tests/testthat/test-clean-tags.R
tests/testthat/test-downsample.R
tests/testthat/test-empty.R
tests/testthat/test-encoding.R
tests/testthat/test-hashing.R
tests/testthat/test-inferamb.R
tests/testthat/test-makecounts.R
tests/testthat/test-maxamb.R
tests/testthat/test-misc.R
tests/testthat/test-molinfo.R
tests/testthat/test-molstats.R
tests/testthat/test-read10x.R
tests/testthat/test-rmamb.R
tests/testthat/test-swapping.R
tests/testthat/test-write10x.R
vignettes/DropletUtils.Rmd
