In MassDynamics/MassExpression: MassExpression

print(params)
knitr::opts_chunk$set(echo = FALSE, message = FALSE, warning = FALSE, 
                      fig.path = params$output_figure, dev = "svg")

library(dplyr)
library(stringr)
library(MassExpression)
library(plotly)

CompleteIntensityExperiment <- params$listInt$CompleteIntensityExperiment
IntensityExperiment <- params$listInt$IntensityExperiment
design <- colData(IntensityExperiment)

comparisonExperiments <- 
    listComparisonExperiments(CompleteIntensityExperiment)

# Plot RLE of log2 raw intensity as well as RLE of normalised 
p_raw <- plot_log_measurement_boxplot(IntensityExperiment, 
                                      title = "Distribution of log2(intensities)",
                                      format = "html")
p_raw

MassDynamics/MassExpression documentation built on May 7, 2023, 11:29 a.m.