tests/testthat/test-PRE_FATE.params_globalParameters.R
In MayaGueguen/RFate: Vegetation modelling with the FATE model
library(RFate)
context("PRE_FATE.params_globalParameters() function")
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with missing data", {
expect_error(PRE_FATE.params_globalParameters()
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(NA)
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(NULL)
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : name.simulation", {
expect_error(PRE_FATE.params_globalParameters(1)
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters("a")
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(factor(1))
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(matrix(seq(2), ncol=2))
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.no_PFG", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
## TEST required.no_PFG : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation")
, "`required.no_PFG` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = NA)
, "`required.no_PFG` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = NULL)
, "`required.no_PFG` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = "")
, "`required.no_PFG` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.no_strata", {
## TEST required.no_strata : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5)
, "`required.no_strata` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = NA)
, "`required.no_strata` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = NULL)
, "`required.no_strata` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = "")
, "`required.no_strata` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.simul_duration", {
## TEST required.simul_duration : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = NA)
, "`required.simul_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = NULL)
, "`required.simul_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = "")
, "`required.simul_duration` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.seeding_duration", {
## TEST required.seeding_duration : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = NA)
, "`required.seeding_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = NULL)
, "`required.seeding_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = "")
, "`required.seeding_duration` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.seeding_timestep", {
## TEST required.seeding_timestep : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = NA)
, "`required.seeding_timestep` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = NULL)
, "`required.seeding_timestep` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = "")
, "`required.seeding_timestep` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.seeding_input", {
## TEST required.seeding_input : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = NA)
, "`required.seeding_input` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = NULL)
, "`required.seeding_input` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = "")
, "`required.seeding_input` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_low", {
## TEST required.max_abund_low : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = NA)
, "`required.max_abund_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = NULL)
, "`required.max_abund_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = "")
, "`required.max_abund_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = -1)
, "`required.max_abund_low` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_medium", {
## TEST required.max_abund_medium : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = NA)
, "`required.max_abund_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = NULL)
, "`required.max_abund_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = "")
, "`required.max_abund_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = -1)
, "`required.max_abund_medium` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_high", {
## TEST required.max_abund_high : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = NA)
, "`required.max_abund_high` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = NULL)
, "`required.max_abund_high` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = "")
, "`required.max_abund_high` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = -1)
, "`required.max_abund_high` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_...", {
## TEST required.max_abund_medium : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 1
, required.max_abund_high = 9000)
, "`required.max_abund_low` must contain values equal or inferior to `required.max_abund_medium`")
## TEST required.max_abund_high : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 1)
, "`required.max_abund_medium` must contain values equal or inferior to `required.max_abund_high`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : LIGHT.thresh_medium", {
## TEST LIGHT.thresh_medium : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = NA)
, "`LIGHT.thresh_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = NULL)
, "`LIGHT.thresh_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = "")
, "`LIGHT.thresh_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = -1)
, "`LIGHT.thresh_medium` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : LIGHT.thresh_low", {
## TEST LIGHT.thresh_low : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = NA)
, "`LIGHT.thresh_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = NULL)
, "`LIGHT.thresh_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = "")
, "`LIGHT.thresh_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = -1)
, "`LIGHT.thresh_low` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : LIGHT.thresh_...", {
## TEST LIGHT.thresh_medium : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 1
, LIGHT.thresh_low = 0)
, "`LIGHT.thresh_medium` must contain values equal or inferior to `LIGHT.thresh_low`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : SOIL.init", {
## TEST SOIL.init : numeric values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = NA)
, "`SOIL.init` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = NULL)
, "`SOIL.init` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = "")
, "`SOIL.init` must contain numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : SOIL.retention", {
## TEST SOIL.retention : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = NA)
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = NULL)
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = "")
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = -0.2)
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = 10)
, "`SOIL.retention` must contain values between `0` and `1`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DISPERSAL.mode", {
## TEST DISPERSAL.mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = NA)
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = NULL)
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = "")
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = factor("a"))
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : HABSUIT.mode", {
## TEST HABSUIT.mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = NA)
, "`HABSUIT.mode` must be either `1` or `2`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = NULL)
, "`HABSUIT.mode` must be either `1` or `2`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = "")
, "`HABSUIT.mode` must be either `1` or `2`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = factor("a"))
, "`HABSUIT.mode` must be either `1` or `2`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DIST.no", {
## TEST DIST.no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = NA)
, "`DIST.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = NULL)
, "`DIST.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = "")
, "`DIST.no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DIST.no_sub", {
## TEST DIST.no_sub : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = NA)
, "`DIST.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = NULL)
, "`DIST.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = "")
, "`DIST.no_sub` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DIST.freq", {
## TEST DIST.freq : integer (vector)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2)
, "`DIST.freq` must contain as many values as the number of disturbances (`DIST.no`)"
, fixed = TRUE)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = NA)
, "`DIST.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = NULL)
, "`DIST.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = "")
, "`DIST.freq` must be an integer > 0")
## TEST DIST.freq : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = 2)
, "`DIST.freq` must contain as many values as the number of disturbances (`DIST.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DROUGHT.no_sub", {
## TEST DROUGHT.no_sub : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = T
, DROUGHT.no_sub = NA)
, "`DROUGHT.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = T
, DROUGHT.no_sub = NULL)
, "`DROUGHT.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = T
, DROUGHT.no_sub = "")
, "`DROUGHT.no_sub` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : ALIEN.no", {
## TEST ALIEN.no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = NA)
, "`ALIEN.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = NULL)
, "`ALIEN.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = "")
, "`ALIEN.no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : ALIEN.freq", {
## TEST ALIEN.freq : integer (vector)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2)
, "`ALIEN.freq` must contain as many values as the number of introductions (`ALIEN.no`)"
, fixed = TRUE)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = NA)
, "`ALIEN.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = NULL)
, "`ALIEN.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = "")
, "`ALIEN.freq` must be an integer > 0")
## TEST ALIEN.freq : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = 2)
, "`ALIEN.freq` must contain as many values as the number of introductions (`ALIEN.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.no", {
## TEST FIRE.no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = NA)
, "`FIRE.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = NULL)
, "`FIRE.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = "")
, "`FIRE.no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.no_sub", {
## TEST FIRE.no_sub : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = NA)
, "`FIRE.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = NULL)
, "`FIRE.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = "")
, "`FIRE.no_sub` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.freq", {
## TEST FIRE.freq : integer (vector)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2)
, "`FIRE.freq` must contain as many values as the number of disturbances (`FIRE.no`)"
, fixed = TRUE)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = NA)
, "`FIRE.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = NULL)
, "`FIRE.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = "")
, "`FIRE.freq` must be an integer > 0")
## TEST FIRE.freq : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = 2)
, "`FIRE.freq` must contain as many values as the number of disturbances (`FIRE.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_mode", {
## TEST FIRE.ignit_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = NA)
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = NULL)
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = "")
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = factor("a"))
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_no", {
## TEST FIRE.ignit_no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 1)
, "`FIRE.ignit_no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 1
, FIRE.ignit_no = NULL)
, "`FIRE.ignit_no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 1
, FIRE.ignit_no = "")
, "`FIRE.ignit_no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_noHist", {
## TEST FIRE.ignit_noHist : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 3)
, "`FIRE.ignit_noHist` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 3
, FIRE.ignit_noHist = NULL)
, "`FIRE.ignit_noHist` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 3
, FIRE.ignit_noHist = "")
, "`FIRE.ignit_noHist` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_logis", {
## TEST FIRE.ignit_logis : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = NULL)
, "`FIRE.ignit_logis` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = "")
, "`FIRE.ignit_logis` must contain numeric values")
## TEST FIRE.ignit_logis : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 2)
, "`FIRE.ignit_logis` must contain 3 numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_flammMax", {
## TEST FIRE.ignit_flammMax : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 1:3)
, "`FIRE.ignit_flammMax` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 1:3
, FIRE.ignit_flammMax = NULL)
, "`FIRE.ignit_flammMax` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 1:3
, FIRE.ignit_flammMax = "")
, "`FIRE.ignit_flammMax` must contain numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.neigh_mode", {
## TEST FIRE.neigh_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = NULL)
, "`FIRE.neigh_mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = "")
, "`FIRE.neigh_mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = factor("a"))
, "`FIRE.neigh_mode` must be either `1`, `2` or `3`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.neigh_CC", {
## TEST FIRE.neigh_CC : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = NULL)
, "`FIRE.neigh_CC` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = "")
, "`FIRE.neigh_CC` must be an integer > 0")
## TEST FIRE.neigh_CC : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = 2)
, "`FIRE.neigh_CC` must contain 4 numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.prop_mode", {
## TEST FIRE.prop_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = NULL)
, "`FIRE.prop_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = "")
, "`FIRE.prop_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = factor("a"))
, "`FIRE.prop_mode` must be either `1`, `2`, `3`, `4` or `5`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.prop_intensity", {
## TEST FIRE.prop_intensity : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1)
, "`FIRE.prop_intensity` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = NULL)
, "`FIRE.prop_intensity` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = "")
, "`FIRE.prop_intensity` must contain numeric values")
## TEST FIRE.prop_intensity : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = 1.5)
, "`FIRE.prop_intensity` must contain values between `0` and `1`")
## TEST FIRE.prop_intensity : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = c(1,2)
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = 1)
, "`FIRE.prop_intensity` must contain as many values as the number of disturbances (`FIRE.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.prop_logis", {
## TEST FIRE.prop_logis : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 5
, FIRE.prop_logis = NULL)
, "`FIRE.prop_logis` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 5
, FIRE.prop_logis = "")
, "`FIRE.prop_logis` must contain numeric values")
## TEST FIRE.prop_logis : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 5
, FIRE.prop_logis = 2)
, "`FIRE.prop_logis` must contain 3 numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.quota_mode", {
## TEST FIRE.quota_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = NULL)
, "`FIRE.quota_mode` must be either `1`, `2`, `3` or `4`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = "")
, "`FIRE.quota_mode` must be either `1`, `2`, `3` or `4`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = factor("a"))
, "`FIRE.quota_mode` must be either `1`, `2`, `3` or `4`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.quota_max", {
## TEST FIRE.quota_max : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = 1
, FIRE.quota_max = NA)
, "`FIRE.quota_max` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = 1
, FIRE.quota_max = NULL)
, "`FIRE.quota_max` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = 1
, FIRE.quota_max = "")
, "`FIRE.quota_max` must be an integer > 0")
})
## OUTPUTS
test_that("PRE_FATE.params_globalParameters gives correct output : scenario classic", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.no_CPU = "a"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "`opt.no_CPU` must be an integer > 0"
, fixed = TRUE)
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V2.txt has been successfully created !")
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "already exists. It will be replaced.")
})
## OUTPUTS
test_that("PRE_FATE.params_globalParameters gives correct output : scenario modules", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
## Light
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = TRUE
, LIGHT.thresh_medium = 4000
, LIGHT.thresh_low = 7000)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Soil
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = TRUE
, SOIL.init = 0
, SOIL.retention = 0.8)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Dispersal
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = TRUE
, DISPERSAL.mode = 2)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Habitat suitability
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = TRUE
, HABSUIT.mode = 1)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Disturbances
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = TRUE
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = c(2,2))
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Drought
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = TRUE
, DROUGHT.no_sub = 3)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Aliens
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = TRUE
, ALIEN.no = 10
, ALIEN.freq = rep(1, 10))
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Fire
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = TRUE
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = c(2,2)
, FIRE.ignit_mode = 1
, FIRE.ignit_no = 10
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = c(3,4,3,4)
, FIRE.prop_mode = 1
, FIRE.prop_intensity = c(0.3, 0.7)
, FIRE.quota_mode = 1
, FIRE.quota_max = 20)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
})
## OUTPUTS
test_that("PRE_FATE.params_globalParameters gives correct output : warning round", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000.5
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "`required.max_abund_low` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000.5
, required.max_abund_high = 9000)
, "`required.max_abund_medium` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000.5)
, "`required.max_abund_high` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = TRUE
, LIGHT.thresh_medium = 10.5
, LIGHT.thresh_low = 50)
, "`LIGHT.thresh_medium` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = TRUE
, LIGHT.thresh_medium = 10
, LIGHT.thresh_low = 50.5)
, "`LIGHT.thresh_low` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
})
MayaGueguen/RFate documentation built on Oct. 17, 2020, 8:06 a.m.
R Package Documentation
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library(RFate)
context("PRE_FATE.params_globalParameters() function")
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with missing data", {
expect_error(PRE_FATE.params_globalParameters()
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(NA)
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(NULL)
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : name.simulation", {
expect_error(PRE_FATE.params_globalParameters(1)
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters("a")
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(factor(1))
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
expect_error(PRE_FATE.params_globalParameters(matrix(seq(2), ncol=2))
, "`name.simulation` does not exist or does not contain a DATA/GLOBAL_PARAMETERS/ folder")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.no_PFG", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
## TEST required.no_PFG : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation")
, "`required.no_PFG` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = NA)
, "`required.no_PFG` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = NULL)
, "`required.no_PFG` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = "")
, "`required.no_PFG` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.no_strata", {
## TEST required.no_strata : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5)
, "`required.no_strata` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = NA)
, "`required.no_strata` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = NULL)
, "`required.no_strata` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = "")
, "`required.no_strata` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.simul_duration", {
## TEST required.simul_duration : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = NA)
, "`required.simul_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = NULL)
, "`required.simul_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = "")
, "`required.simul_duration` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.seeding_duration", {
## TEST required.seeding_duration : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = NA)
, "`required.seeding_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = NULL)
, "`required.seeding_duration` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = "")
, "`required.seeding_duration` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.seeding_timestep", {
## TEST required.seeding_timestep : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = NA)
, "`required.seeding_timestep` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = NULL)
, "`required.seeding_timestep` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = "")
, "`required.seeding_timestep` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.seeding_input", {
## TEST required.seeding_input : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = NA)
, "`required.seeding_input` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = NULL)
, "`required.seeding_input` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = "")
, "`required.seeding_input` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_low", {
## TEST required.max_abund_low : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = NA)
, "`required.max_abund_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = NULL)
, "`required.max_abund_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = "")
, "`required.max_abund_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = -1)
, "`required.max_abund_low` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_medium", {
## TEST required.max_abund_medium : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = NA)
, "`required.max_abund_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = NULL)
, "`required.max_abund_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = "")
, "`required.max_abund_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = -1)
, "`required.max_abund_medium` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_high", {
## TEST required.max_abund_high : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = NA)
, "`required.max_abund_high` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = NULL)
, "`required.max_abund_high` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = "")
, "`required.max_abund_high` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = -1)
, "`required.max_abund_high` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : required.max_abund_...", {
## TEST required.max_abund_medium : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 1
, required.max_abund_high = 9000)
, "`required.max_abund_low` must contain values equal or inferior to `required.max_abund_medium`")
## TEST required.max_abund_high : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 1)
, "`required.max_abund_medium` must contain values equal or inferior to `required.max_abund_high`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : LIGHT.thresh_medium", {
## TEST LIGHT.thresh_medium : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = NA)
, "`LIGHT.thresh_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = NULL)
, "`LIGHT.thresh_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = "")
, "`LIGHT.thresh_medium` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = -1)
, "`LIGHT.thresh_medium` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : LIGHT.thresh_low", {
## TEST LIGHT.thresh_low : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = NA)
, "`LIGHT.thresh_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = NULL)
, "`LIGHT.thresh_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = "")
, "`LIGHT.thresh_low` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 13000000
, LIGHT.thresh_low = -1)
, "`LIGHT.thresh_low` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : LIGHT.thresh_...", {
## TEST LIGHT.thresh_medium : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = T
, LIGHT.thresh_medium = 1
, LIGHT.thresh_low = 0)
, "`LIGHT.thresh_medium` must contain values equal or inferior to `LIGHT.thresh_low`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : SOIL.init", {
## TEST SOIL.init : numeric values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = NA)
, "`SOIL.init` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = NULL)
, "`SOIL.init` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = "")
, "`SOIL.init` must contain numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : SOIL.retention", {
## TEST SOIL.retention : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = NA)
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = NULL)
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = "")
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = -0.2)
, "`SOIL.retention` must contain values between `0` and `1`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = T
, SOIL.init = 0
, SOIL.retention = 10)
, "`SOIL.retention` must contain values between `0` and `1`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DISPERSAL.mode", {
## TEST DISPERSAL.mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = NA)
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = NULL)
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = "")
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = T
, DISPERSAL.mode = factor("a"))
, "`DISPERSAL.mode` must be either `1`, `2` or `3`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : HABSUIT.mode", {
## TEST HABSUIT.mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = NA)
, "`HABSUIT.mode` must be either `1` or `2`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = NULL)
, "`HABSUIT.mode` must be either `1` or `2`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = "")
, "`HABSUIT.mode` must be either `1` or `2`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = T
, HABSUIT.mode = factor("a"))
, "`HABSUIT.mode` must be either `1` or `2`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DIST.no", {
## TEST DIST.no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = NA)
, "`DIST.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = NULL)
, "`DIST.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = "")
, "`DIST.no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DIST.no_sub", {
## TEST DIST.no_sub : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = NA)
, "`DIST.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = NULL)
, "`DIST.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = "")
, "`DIST.no_sub` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DIST.freq", {
## TEST DIST.freq : integer (vector)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2)
, "`DIST.freq` must contain as many values as the number of disturbances (`DIST.no`)"
, fixed = TRUE)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = NA)
, "`DIST.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = NULL)
, "`DIST.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = "")
, "`DIST.freq` must be an integer > 0")
## TEST DIST.freq : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = T
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = 2)
, "`DIST.freq` must contain as many values as the number of disturbances (`DIST.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : DROUGHT.no_sub", {
## TEST DROUGHT.no_sub : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = T
, DROUGHT.no_sub = NA)
, "`DROUGHT.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = T
, DROUGHT.no_sub = NULL)
, "`DROUGHT.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = T
, DROUGHT.no_sub = "")
, "`DROUGHT.no_sub` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : ALIEN.no", {
## TEST ALIEN.no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = NA)
, "`ALIEN.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = NULL)
, "`ALIEN.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = "")
, "`ALIEN.no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : ALIEN.freq", {
## TEST ALIEN.freq : integer (vector)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2)
, "`ALIEN.freq` must contain as many values as the number of introductions (`ALIEN.no`)"
, fixed = TRUE)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = NA)
, "`ALIEN.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = NULL)
, "`ALIEN.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = "")
, "`ALIEN.freq` must be an integer > 0")
## TEST ALIEN.freq : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = T
, ALIEN.no = 2
, ALIEN.freq = 2)
, "`ALIEN.freq` must contain as many values as the number of introductions (`ALIEN.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.no", {
## TEST FIRE.no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = NA)
, "`FIRE.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = NULL)
, "`FIRE.no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = "")
, "`FIRE.no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.no_sub", {
## TEST FIRE.no_sub : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = NA)
, "`FIRE.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = NULL)
, "`FIRE.no_sub` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = "")
, "`FIRE.no_sub` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.freq", {
## TEST FIRE.freq : integer (vector)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2)
, "`FIRE.freq` must contain as many values as the number of disturbances (`FIRE.no`)"
, fixed = TRUE)
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = NA)
, "`FIRE.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = NULL)
, "`FIRE.freq` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = "")
, "`FIRE.freq` must be an integer > 0")
## TEST FIRE.freq : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = 2)
, "`FIRE.freq` must contain as many values as the number of disturbances (`FIRE.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_mode", {
## TEST FIRE.ignit_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = NA)
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = NULL)
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = "")
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = factor("a"))
, "`FIRE.ignit_mode` must be either `1`, `2`, `3`, `4` or `5`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_no", {
## TEST FIRE.ignit_no : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 1)
, "`FIRE.ignit_no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 1
, FIRE.ignit_no = NULL)
, "`FIRE.ignit_no` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 1
, FIRE.ignit_no = "")
, "`FIRE.ignit_no` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_noHist", {
## TEST FIRE.ignit_noHist : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 3)
, "`FIRE.ignit_noHist` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 3
, FIRE.ignit_noHist = NULL)
, "`FIRE.ignit_noHist` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 3
, FIRE.ignit_noHist = "")
, "`FIRE.ignit_noHist` must be an integer > 0")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_logis", {
## TEST FIRE.ignit_logis : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = NULL)
, "`FIRE.ignit_logis` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = "")
, "`FIRE.ignit_logis` must contain numeric values")
## TEST FIRE.ignit_logis : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 2)
, "`FIRE.ignit_logis` must contain 3 numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.ignit_flammMax", {
## TEST FIRE.ignit_flammMax : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 1:3)
, "`FIRE.ignit_flammMax` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 1:3
, FIRE.ignit_flammMax = NULL)
, "`FIRE.ignit_flammMax` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 4
, FIRE.ignit_logis = 1:3
, FIRE.ignit_flammMax = "")
, "`FIRE.ignit_flammMax` must contain numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.neigh_mode", {
## TEST FIRE.neigh_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = NULL)
, "`FIRE.neigh_mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = "")
, "`FIRE.neigh_mode` must be either `1`, `2` or `3`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = factor("a"))
, "`FIRE.neigh_mode` must be either `1`, `2` or `3`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.neigh_CC", {
## TEST FIRE.neigh_CC : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = NULL)
, "`FIRE.neigh_CC` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = "")
, "`FIRE.neigh_CC` must be an integer > 0")
## TEST FIRE.neigh_CC : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = 2)
, "`FIRE.neigh_CC` must contain 4 numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.prop_mode", {
## TEST FIRE.prop_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = NULL)
, "`FIRE.prop_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = "")
, "`FIRE.prop_mode` must be either `1`, `2`, `3`, `4` or `5`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = factor("a"))
, "`FIRE.prop_mode` must be either `1`, `2`, `3`, `4` or `5`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.prop_intensity", {
## TEST FIRE.prop_intensity : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1)
, "`FIRE.prop_intensity` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = NULL)
, "`FIRE.prop_intensity` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = "")
, "`FIRE.prop_intensity` must contain numeric values")
## TEST FIRE.prop_intensity : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = 1.5)
, "`FIRE.prop_intensity` must contain values between `0` and `1`")
## TEST FIRE.prop_intensity : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = c(1,2)
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 1
, FIRE.prop_intensity = 1)
, "`FIRE.prop_intensity` must contain as many values as the number of disturbances (`FIRE.no`)"
, fixed = TRUE)
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.prop_logis", {
## TEST FIRE.prop_logis : numeric
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 5
, FIRE.prop_logis = NULL)
, "`FIRE.prop_logis` must contain numeric values")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 5
, FIRE.prop_logis = "")
, "`FIRE.prop_logis` must contain numeric values")
## TEST FIRE.prop_logis : correct number of values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 5
, FIRE.prop_logis = 2)
, "`FIRE.prop_logis` must contain 3 numeric values")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.quota_mode", {
## TEST FIRE.quota_mode : correct values
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = NULL)
, "`FIRE.quota_mode` must be either `1`, `2`, `3` or `4`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = "")
, "`FIRE.quota_mode` must be either `1`, `2`, `3` or `4`")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = factor("a"))
, "`FIRE.quota_mode` must be either `1`, `2`, `3` or `4`")
})
## INPUTS
test_that("PRE_FATE.params_globalParameters gives error with wrong data : FIRE.quota_max", {
## TEST FIRE.quota_max : integer
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = 1
, FIRE.quota_max = NA)
, "`FIRE.quota_max` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = 1
, FIRE.quota_max = NULL)
, "`FIRE.quota_max` must be an integer > 0")
expect_error(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = T
, FIRE.no = 1
, FIRE.no_sub = 2
, FIRE.freq = 2
, FIRE.ignit_mode = 5
, FIRE.neigh_mode = 1
, FIRE.prop_mode = 2
, FIRE.quota_mode = 1
, FIRE.quota_max = "")
, "`FIRE.quota_max` must be an integer > 0")
})
## OUTPUTS
test_that("PRE_FATE.params_globalParameters gives correct output : scenario classic", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.no_CPU = "a"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "`opt.no_CPU` must be an integer > 0"
, fixed = TRUE)
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V2.txt has been successfully created !")
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "already exists. It will be replaced.")
})
## OUTPUTS
test_that("PRE_FATE.params_globalParameters gives correct output : scenario modules", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
## Light
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = TRUE
, LIGHT.thresh_medium = 4000
, LIGHT.thresh_low = 7000)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Soil
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doSoil = TRUE
, SOIL.init = 0
, SOIL.retention = 0.8)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Dispersal
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDispersal = TRUE
, DISPERSAL.mode = 2)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Habitat suitability
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doHabSuitability = TRUE
, HABSUIT.mode = 1)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Disturbances
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDisturbances = TRUE
, DIST.no = 2
, DIST.no_sub = 2
, DIST.freq = c(2,2))
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Drought
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doDrought = TRUE
, DROUGHT.no_sub = 3)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Aliens
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doAliens = TRUE
, ALIEN.no = 10
, ALIEN.freq = rep(1, 10))
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
## Fire
expect_message(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doFire = TRUE
, FIRE.no = 2
, FIRE.no_sub = 2
, FIRE.freq = c(2,2)
, FIRE.ignit_mode = 1
, FIRE.ignit_no = 10
, FIRE.neigh_mode = 2
, FIRE.neigh_CC = c(3,4,3,4)
, FIRE.prop_mode = 1
, FIRE.prop_intensity = c(0.3, 0.7)
, FIRE.quota_mode = 1
, FIRE.quota_max = 20)
, "The parameter file FATE_simulation/DATA/GLOBAL_PARAMETERS/Global_parameters_V1.txt has been successfully created !")
})
## OUTPUTS
test_that("PRE_FATE.params_globalParameters gives correct output : warning round", {
if (dir.exists("FATE_simulation")) unlink("FATE_simulation", recursive = TRUE)
PRE_FATE.skeletonDirectory()
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000.5
, required.max_abund_medium = 5000
, required.max_abund_high = 9000)
, "`required.max_abund_low` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000.5
, required.max_abund_high = 9000)
, "`required.max_abund_medium` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000.5)
, "`required.max_abund_high` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = TRUE
, LIGHT.thresh_medium = 10.5
, LIGHT.thresh_low = 50)
, "`LIGHT.thresh_medium` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
expect_warning(PRE_FATE.params_globalParameters(name.simulation = "FATE_simulation"
, opt.replacePrevious = TRUE
, required.no_PFG = 5
, required.no_strata = 2
, required.simul_duration = 100
, required.seeding_duration = 100
, required.seeding_timestep = 100
, required.seeding_input = 100
, required.max_abund_low = 3000
, required.max_abund_medium = 5000
, required.max_abund_high = 9000
, doLight = TRUE
, LIGHT.thresh_medium = 10
, LIGHT.thresh_low = 50.5)
, "`LIGHT.thresh_low` is a double. It will be converted (rounded) to an integer"
, fixed = TRUE)
})
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