annotate_nterm: Annotate peptides based on their N-terminal (bio)chemical...

In MiguelCos/fragNterminomics: Annotation and processing of peptides from FragPipe search results

Annotate peptides based on their N-terminal (bio)chemical modification.

Description

Annotate peptides based on their N-terminal (bio)chemical modification.

Usage

annotate_nterm(peptidestsv, tmtmass = 304.2072, protease_specificity = "R|K")

Arguments

peptidestsv	A data frame coming from the 'peptide.tsv' tabular output from a FragPipe search.
tmtmass	A numeric object. Defining the mass of your TMT labels. 304.2072 for 16plex or 229.1629 for 10/11plex.
protease_specificity	A string. Defining the protease specificity. Examples: "R|K" for Trypsin; "R" for Argc.

Value

A data frame with annotation of N-terminal modifications.

MiguelCos/fragNterminomics documentation built on Oct. 13, 2023, 5:31 a.m.