prot_ident: Proteins identified and associated modifications
In MiguelCos/fragNterminomics: Annotation and processing of peptides from FragPipe search results
prot_ident R Documentation
Proteins identified and associated modifications
Description
Protein identification table from the Polycystic Disease mouse model experiment
Usage
prot_ident
Format
A data frame with 5986 rows and 41 variables:
- group
Protein group
- sub_group
Protein subgroup
- protein
Protein header
- protein_id
Uniprot protein ID
- entry_name
Uniprot Entry ID
- gene
Gene name
- length
Protein length
- percent_coverage
Coverage of protein identification
- organism
- protein_description
- protein_existence
- protein_description
- protein_probability
- top_peptide_probability
- total_peptides
- unique_peptides
Number of unique peptides identified
- razor_peptides
- total_spectral_count
Total spectral counts of identified peptides
- unique_spectral_count
Spectral counts of unique peptides
- razor_spectral_count
Spectral counts of razor peptides
- total_intensity
- unique_intensity
- razor_intensity
- razor_assigned_modifications
- razor_observed_modifications
- indistinguishable_proteins
- indistinguishable_proteins
- ko/wt
Raw intensity values of reporter ions by sample
- mt_*
Raw intensity values of empty TMT channels
MiguelCos/fragNterminomics documentation built on Oct. 13, 2023, 5:31 a.m.
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| prot_ident | R Documentation |
Proteins identified and associated modifications
Description
Protein identification table from the Polycystic Disease mouse model experiment
Usage
prot_ident
Format
A data frame with 5986 rows and 41 variables:
- group
Protein group
- sub_group
Protein subgroup
- protein
Protein header
- protein_id
Uniprot protein ID
- entry_name
Uniprot Entry ID
- gene
Gene name
- length
Protein length
- percent_coverage
Coverage of protein identification
- organism
- protein_description
- protein_existence
- protein_description
- protein_probability
- top_peptide_probability
- total_peptides
- unique_peptides
Number of unique peptides identified
- razor_peptides
- total_spectral_count
Total spectral counts of identified peptides
- unique_spectral_count
Spectral counts of unique peptides
- razor_spectral_count
Spectral counts of razor peptides
- total_intensity
- unique_intensity
- razor_intensity
- razor_assigned_modifications
- razor_observed_modifications
- indistinguishable_proteins
- indistinguishable_proteins
- ko/wt
Raw intensity values of reporter ions by sample
- mt_*
Raw intensity values of empty TMT channels
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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