View source: R/normalize_peptide_abund_by_protein_abund.R
peptide2protein_normalization | R Documentation |
Takes information of protein intensity and peptide intensity and perform normalization of peptide abundance based on protein abundance.
peptide2protein_normalization(
peptides,
annot,
peptide_annot,
summarize_by_specificity = TRUE
)
peptides |
Data frame of peptide intensities that will be normalized by protein abundance. Typically gotten from the 'purify_n_normalize' function. |
annot |
Data frame obtained from loading the 'annotation.txt' from Fragpipe output. First column should be named 'channel' and second column should be named 'sample'. |
peptide_annot |
peptide annotation with specificity information. As it comes from merging the outputs from the functions 'annotate_peptides' and 'psmtsv_to_modified_peptides' |
List with four elements:
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