pept_ident: Peptides identified and associated modifications

pept_identR Documentation

Peptides identified and associated modifications

Description

Peptides identification table from the Polycystic Disease mouse model experiment

Usage

pept_ident

Format

A data frame with 30879 rows and 33 variables:

peptide

Peptide sequence

prev_aa

Amino acid before in the protein sequence

next_aa

Amino acid after in the protein sequence

peptide_length
probability

Peptide Probability Score

spectral_count

Spectral counts for identified peptide

intensity

Raw intensity value of precursor ion

assigned_modifications

Chemical modifications assigned to the identified peptide

observed_modifications
protein

Protein header

protein_id

Uniprot ID

entry_name

Uniprot entry name

gene
protein_description
mapped_genes
mapped_proteins

Number of unique peptides identified

ko/wt

Raw intensity values of reporter ions by sample

mt_*

Raw intensity values of empty TMT channels


MiguelCos/fragNterminomics documentation built on Oct. 13, 2023, 5:31 a.m.