pept_ident: Peptides identified and associated modifications
In MiguelCos/fragNterminomics: Annotation and processing of peptides from FragPipe search results
pept_ident R Documentation
Peptides identified and associated modifications
Description
Peptides identification table from the Polycystic Disease mouse model experiment
Usage
pept_ident
Format
A data frame with 30879 rows and 33 variables:
- peptide
Peptide sequence
- prev_aa
Amino acid before in the protein sequence
- next_aa
Amino acid after in the protein sequence
- peptide_length
- probability
Peptide Probability Score
- spectral_count
Spectral counts for identified peptide
- intensity
Raw intensity value of precursor ion
- assigned_modifications
Chemical modifications assigned to the identified peptide
- observed_modifications
- protein
Protein header
- protein_id
Uniprot ID
- entry_name
Uniprot entry name
- gene
- protein_description
- mapped_genes
- mapped_proteins
Number of unique peptides identified
- ko/wt
Raw intensity values of reporter ions by sample
- mt_*
Raw intensity values of empty TMT channels
MiguelCos/fragNterminomics documentation built on Oct. 13, 2023, 5:31 a.m.
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| pept_ident | R Documentation |
Peptides identified and associated modifications
Description
Peptides identification table from the Polycystic Disease mouse model experiment
Usage
pept_ident
Format
A data frame with 30879 rows and 33 variables:
- peptide
Peptide sequence
- prev_aa
Amino acid before in the protein sequence
- next_aa
Amino acid after in the protein sequence
- peptide_length
- probability
Peptide Probability Score
- spectral_count
Spectral counts for identified peptide
- intensity
Raw intensity value of precursor ion
- assigned_modifications
Chemical modifications assigned to the identified peptide
- observed_modifications
- protein
Protein header
- protein_id
Uniprot ID
- entry_name
Uniprot entry name
- gene
- protein_description
- mapped_genes
- mapped_proteins
Number of unique peptides identified
- ko/wt
Raw intensity values of reporter ions by sample
- mt_*
Raw intensity values of empty TMT channels
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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