feature_fdr_correction: Apply multiple-testing p-value adjustment on specified...
In MiguelCos/fragNterminomics: Annotation and processing of peptides from FragPipe search results
View source: R/feature_specific_fdr.R
feature_fdr_correction R Documentation
Apply multiple-testing p-value adjustment on specified features
Description
Apply multiple-testing p-value adjustment on specified features
Usage
feature_fdr_correction(toptable, interesting_features_table, method = "BH")
Arguments
toptable
a data frame in the same format as the output of the 'topTable' function from the 'limma' package
method
a string to be passed as a method to the 'p.adjust' function for multiple-testing correction. "BH" is default.
Value
a data frame containing a new column 'fdr_correction', indicating if
the the adjusted p-value comes from
MiguelCos/fragNterminomics documentation built on Oct. 13, 2023, 5:31 a.m.
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View source: R/feature_specific_fdr.R
| feature_fdr_correction | R Documentation |
Apply multiple-testing p-value adjustment on specified features
Description
Apply multiple-testing p-value adjustment on specified features
Usage
feature_fdr_correction(toptable, interesting_features_table, method = "BH")
Arguments
toptable |
a data frame in the same format as the output of the 'topTable' function from the 'limma' package |
method |
a string to be passed as a method to the 'p.adjust' function for multiple-testing correction. "BH" is default. |
Value
a data frame containing a new column 'fdr_correction', indicating if the the adjusted p-value comes from
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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