README.md

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

MotrpacBicQC

An R package for the MoTrPAC community

Overview

This package provides a set of functions for Primary and Secondary QC/QA analysis of datasets generated by the Metabolomics, Targeted, and Untargeted Proteomics MoTrPAC Chemical Analysis Sites (CAS). It also provides additional functions and data objects for analysis.

Package Updates

This package is frequently updated. Please, check the file NEWS.md to find out more about the changes affecting every version

Installation

First, download and install R and RStudio:

• R
• RStudio (free version)

Then, open RStudio and install the devtools package

install.packages("devtools")

Finally, install the MotrpacBicQC package

library(devtools)
devtools::install_github("MoTrPAC/MotrpacBicQC")

Usage

The following vignettes are available:

• Metabolomics
• Proteomics (untargeted)
• Proteomics (olink)
• Other functions

Alternatively, once the package is installed, run the following command to access the same documentation:

browseVignettes("MotrpacBicQC")

Follow this link for details of all the available functions

Help

Need help? Please, submit an issue here providing as many details as possible.

Credit

MoTrPAC Bioinformatics Center

MoTrPAC/MotrpacBicQC documentation built on Sept. 26, 2024, 11:10 a.m.