check_viallabel_dmaqc: Validate vial labels from DMAQC

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

Validate vial labels from DMAQC

Description

validate vial label from DMAQC

Usage

check_viallabel_dmaqc(
  vl_submitted,
  dmaqc_shipping_info,
  tissue_code,
  cas,
  phase,
  failed_samples,
  out_qc_folder = NULL,
  outfile_missed_viallabels,
  return_n_issues = FALSE,
  verbose = TRUE
)

Arguments

vl_submitted	(vector) results df
dmaqc_shipping_info	(data.frame) dmaqc shipping information
tissue_code	(char) tissue code
cas	(char) CAS code
phase	(char) phase code
failed_samples	(char) metadata_metabolites df
out_qc_folder	(char) output qc folder (it creates the folder if it doesn't exist)
outfile_missed_viallabels	(char) file name for missed vial labels
return_n_issues	(logical) if TRUE returns the number of issues
verbose	(logical) TRUE (default) shows messages

Value

(int) number of issues identified

MoTrPAC/MotrpacBicQC documentation built on Sept. 26, 2024, 11:10 a.m.