combine_metabolomics_batch: Combines all files from a Metabolomics batch

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

Combines all files from a Metabolomics batch

Description

Combines all the files from an untargeted assay submission including metadata_sample, metadata_metabolites, results for both "NAMED" and "UNNAMED" folders

Usage

combine_metabolomics_batch(input_results_folder, cas, verbose = TRUE)

Arguments

input_results_folder	(char) Path to the PROCESSED_YYYYMMDD folder
cas	(char) Chemical Analytical Site code (e.g "umichigan")
verbose	(logical) TRUE (default) shows messages

Value

(int) number of issues identified

Examples

## Not run: 
all_datasets <- combine_metabolomics_batch(
                        input_results_folder = "/full/path/to/PROCESSED_YYYYMMDD/",
                        cas = "umichigan")

## End(Not run)

MoTrPAC/MotrpacBicQC documentation built on Sept. 26, 2024, 11:10 a.m.