proteomics_plots_rii: QC Plot of proteomics reporter ion intensity data

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

QC Plot of proteomics reporter ion intensity data

Description

check whether results file is following guidelines

Usage

proteomics_plots_rii(
  all_vial_labels,
  all_samples,
  peprii,
  isPTM,
  v_m,
  out_qc_folder = NULL,
  output_prefix,
  printPDF,
  verbose
)

Arguments

all_vial_labels	(vector) only vial_labels
all_samples	(vector) all sample ids
peprii	(char) Reporter Ion Intensity df
isPTM	(logical) Is a PTM assay
v_m	(df) sample metadata
out_qc_folder	(char) if ⁠f_proof is TRUE⁠, a folder path can be provided (otherwise print in current working directory)
output_prefix	(char) provide a prefix for the output name
printPDF	(logical) if TRUE (default print plots to pdf)
verbose	(logical) TRUE (default) shows messages

Value

(int) number of issues identified

Examples

{
check_results(r_m = results_named, m_s = metadata_sample_named, m_m = metadata_metabolites_named)
}

MoTrPAC/MotrpacBicQC documentation built on Sept. 26, 2024, 11:10 a.m.