check_metadata_proteins: Check olink metadata proteins file

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

Check olink metadata proteins file

Description

check whether metadata-proteins.txt file is following guidelines

Usage

check_metadata_proteins(
  df,
  return_n_issues = FALSE,
  validate_uniprot = FALSE,
  verbose = TRUE
)

Arguments

df	(data.frame) metadata_proteins df
return_n_issues	(logical) if TRUE returns the number of issues.
validate_uniprot	(logical) if TRUE, check if all uniprot ids are valid connecting to Uniprot. Note: depending on the number of ids, it might take several finish to complete the validation
verbose	(logical) TRUE (default) shows messages

Value

(int) number of issues identified

Examples

{
## Not run: 
check_metadata_proteins(df = metadata_proteins)

## End(Not run)
}

MoTrPAC/MotrpacBicQC documentation built on Sept. 26, 2024, 11:10 a.m.