check_crossfile_validation: Cross-validate assay files (Olink and LAB)

In MoTrPAC/MotrpacBicQC: QC/QA functions for the MoTrPAC community

Cross-validate assay files (Olink and LAB)

Description

Checks that values from the results file are available in both the metadata analyte/protein and metadata sample files.

Usage

check_crossfile_validation(
  r_o,
  m_s,
  m_p,
  assay_type = c("olink", "lab"),
  return_n_issues = FALSE,
  verbose = TRUE
)

Arguments

r_o	(data.frame) Results data frame.
m_s	(data.frame) Metadata sample data frame.
m_p	(data.frame) Metadata analyte/protein data frame.
assay_type	(character) The type of assay, either "olink" or "lab".
return_n_issues	(logical) If TRUE, returns the number of issues.
verbose	(logical) If TRUE (default), displays messages during the checking process.

Value

(int) Number of issues identified if return_n_issues is TRUE.

Examples

{
## Not run: 
# For Olink data
check_crossfile_validation(r_o = results_olink,
                           m_s = metadata_samples_olink,
                           m_p = metadata_proteins_olink,
                           assay_type = "olink")

# For LAB data
check_crossfile_validation(r_o = results_lab,
                           m_s = metadata_samples_lab,
                           m_p = metadata_analyte_lab,
                           assay_type = "lab")

## End(Not run)
}

MoTrPAC/MotrpacBicQC documentation built on April 11, 2025, 7:51 p.m.