MonashBioinformaticsPlatform/celaref: Single-cell RNAseq cell cluster labelling by reference

After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).

Getting started

Package details

Bioconductor views SingleCell
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
MonashBioinformaticsPlatform/celaref documentation built on June 5, 2019, 11:35 a.m.