get_counts_index: get_counts_index
In MonashBioinformaticsPlatform/celaref: Single-cell RNAseq cell cluster labelling by reference
Description
Usage
Arguments
Value
Description
get_counts_index is an internal utility function to find out where
the counts are (if anywhere.). Stops if there's no assay called 'counts',
(unless there is only a single unnamed assay).
Usage
1
get_counts_index(n_assays, assay_names)
Arguments
n_assays
How many assays are there? ie: length(assays(dataset_se))
assay_names
What are the assays called? ie: names(assays(dataset_se))
Value
The index of an assay in assays called 'counts', or, if there's just
the one unnamed assay - happily assume that that is counts.
MonashBioinformaticsPlatform/celaref documentation built on June 5, 2019, 11:35 a.m.
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Description Usage Arguments Value
Description
get_counts_index is an internal utility function to find out where
the counts are (if anywhere.). Stops if there's no assay called 'counts',
(unless there is only a single unnamed assay).
Usage
1 | get_counts_index(n_assays, assay_names)
|
Arguments
n_assays |
How many assays are there? ie: length(assays(dataset_se)) |
assay_names |
What are the assays called? ie: names(assays(dataset_se)) |
Value
The index of an assay in assays called 'counts', or, if there's just the one unnamed assay - happily assume that that is counts.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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