get_ranking_and_test_results: get_ranking_and_test_results

In MonashBioinformaticsPlatform/celaref: Single-cell RNAseq cell cluster labelling by reference

Description

Internal function to get reference group similarity contrasts for an individual query qroup.

Usage

get_ranking_and_test_results(de_table.ref.marked, the_test_group,
  the_test_dataset, the_ref_dataset, num_steps, pval = 0.01)

Arguments

de_table.ref.marked	see make_ref_similarity_names_using_marked
the_test_group	The group to calculate the stats on.
the_test_dataset	see make_ref_similarity_names_using_marked
the_ref_dataset	see make_ref_similarity_names_using_marked
num_steps	see make_ref_similarity_names_using_marked
pval	see make_ref_similarity_names_using_marked

Details

For use by make_ref_similarity_names_using_marked, see that function for parameter details. This function just runs this for a single query group the_test_group

Value

Table of similarity contrast results/assigned names e.t.c for a single group. Used internally for populating mwtest_res_table tables.

See Also

make_ref_similarity_names_using_marked which calls this.

MonashBioinformaticsPlatform/celaref documentation built on June 5, 2019, 11:35 a.m.