make_ref_similarity_names_for_group: make_ref_similarity_names_for_group

In MonashBioinformaticsPlatform/celaref: Single-cell RNAseq cell cluster labelling by reference

Description

Internal function, called by make_ref_similarity_names_using_marked for each group.

Usage

make_ref_similarity_names_for_group(the_test_group, mwtest_res_table,
  de_table.ref.marked, reciprocal_matches = NA, the_test_dataset,
  the_ref_dataset, the_pval)

Arguments

the_test_group	Query group to make name for
mwtest_res_table	Mann-whitney test results as constructed in make_ref_similarity_names_using_marked
de_table.ref.marked	The output of get_the_up_genes_for_all_possible_groups for the contrast of interest.
reciprocal_matches	Simplified table of reciprocal matches prepared within make_ref_similarity_names_using_marked. If omitted no reciprocal matching done. Default = NA.
the_test_dataset	A short meaningful name for the experiment. (Should match test_dataset column in de_table.marked)
the_ref_dataset	A short meaningful name for the experiment. (Should match dataset column in de_table.marked)
the_pval	pval as per make_ref_similarity_names_using_marked

Value

A tibble with just one group's labelling information, as per make_ref_similarity_names_using_marked

See Also

make_ref_similarity_names_using_marked Only place that uses this function, details there.

MonashBioinformaticsPlatform/celaref documentation built on June 5, 2019, 11:35 a.m.