Man pages for MonashBioinformaticsPlatform/celaref
Single-cell RNAseq cell cluster labelling by reference

contrast_each_group_to_the_restcontrast_each_group_to_the_rest
contrast_each_group_to_the_rest_for_norm_ma_with_limmacontrast_each_group_to_the_rest_for_norm_ma_with_limma
contrast_the_group_to_the_restcontrast_the_group_to_the_rest
contrast_the_group_to_the_rest_with_limma_for_microarraycontrast_the_group_to_the_rest_with_limma_for_microarray
convert_se_gene_idsconvert_se_gene_ids
demo_cell_info_tableDemo cell info table
demo_counts_matrixDemo count matrix
demo_gene_info_tableDemo gene info table
demo_microarray_exprDemo microarray expression table
demo_microarray_sample_sheetDemo microarray sample sheet table
demo_query_seDemo query se (summarizedExperiment)
demo_ref_seDemo reference se (summarizedExperiment)
de_table.demo_queryDemo query de table
de_table.demo_refDemo ref de table
find_within_match_differencesfind_within_match_differences
get_counts_indexget_counts_index
get_inner_or_outer_ciget_inner_or_outer_ci
get_limma_top_table_with_ciget_limma_top_table_with_ci
get_matched_stepped_mwtest_res_tableget_matched_stepped_mwtest_res_table
get_ranking_and_test_resultsget_ranking_and_test_results
get_rankstat_tableget_rankstat_table
get_reciprocal_matchesget_reciprocal_matches
get_stepped_pvals_strget_stepped_pvals_str
get_the_up_genes_for_all_possible_groupsget_the_up_genes_for_all_possible_groups
get_the_up_genes_for_groupget_the_up_genes_for_group
get_vs_random_pvalget_vs_random_pval
load_dataset_10Xdataload_dataset_10Xdata
load_se_from_tablesload_se_from_tables
make_ranking_violin_plotmake_ranking_violin_plot
make_ref_similarity_namesmake_ref_similarity_names
make_ref_similarity_names_for_groupmake_ref_similarity_names_for_group
run_pair_test_statsrun_pair_test_stats
subset_cells_by_groupsubset_cells_by_group
subset_se_cells_for_group_testsubset_se_cells_for_group_test
trim_small_groups_and_low_expression_genestrim_small_groups_and_low_expression_genes
MonashBioinformaticsPlatform/celaref documentation built on June 5, 2019, 11:35 a.m.