run_pair_test_stats: run_pair_test_stats

In MonashBioinformaticsPlatform/celaref: Single-cell RNAseq cell cluster labelling by reference

Description

Internal function to compare the distribution of a query datasets 'top' genes between two different reference datasete groups with a Mann–Whitney U test. One directional test if groupA median < group B.

Usage

run_pair_test_stats(de_table.ref.marked, the_test_group, groupA, groupB,
  enforceAgtB = TRUE)

Arguments

de_table.ref.marked	The output of get_the_up_genes_for_all_possible_groups for the contrast of interest.
the_test_group	Name of the test group in query dataset.
groupA	One of the reference group names
groupB	Another of the reference group names
enforceAgtB	Do a one tailed test of A 'less' B (more similar)? Or two-tailed. Default = TRUE.

Details

For use by make_ref_similarity_names_using_marked

Value

A tibble of wilcox / man-whitneyU test results for this contrast.

See Also

make_ref_similarity_names_using_marked

MonashBioinformaticsPlatform/celaref documentation built on June 5, 2019, 11:35 a.m.