Files in MonkeyLB/hicrep
Measuring the reproducibility of Hi-C data
.DS_Store
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/HiCR1.R
R/HiCR2.R
R/RcppExports.R
R/bed2mat.R
R/cool2matrix.R
R/depth.adj.R
R/fast.mean.filter.R
R/get.scc.R
R/hic2mat.R
R/hicrep.R
R/htrain.R
R/vstran.R
README.md
data/HiCR1.rda
data/HiCR2.rda
data/datalist
hicrep.Rproj
hicrep_1.12.2.tar.gz
inst/extdata/Dixon2012-H1hESC-HindIII.cool
man/HiCR1.Rd
man/HiCR2.Rd
man/bed2mat.Rd
man/cool2matrix.Rd
man/depth.adj.Rd
man/fast.mean.filter.Rd
man/get.scc.Rd
man/hic2mat.Rd
man/hicrep-package.Rd
man/htrain.Rd
man/vstran.Rd
src/RcppExports.cpp
src/RcppExports.o
src/fastMeanFilter.cpp
src/fastMeanFilter.o
src/hicrep.dll
tests/testthat.R
tests/testthat/test.cool2matrix.R
tests/testthat/test.depth.adj.R
tests/testthat/test.fast.mean.filter.R
tests/testthat/test.get.scc.R
tests/testthat/test.htrain.R
tests/testthat/test.vstran.R
vignettes/Smoothing_neighborhood.JPG
vignettes/Smoothing_parameter.JPG
vignettes/hicrep-pipeline.JPG
vignettes/hicrep-vigenette.Rmd
